import datetime
import enum
import io
import json
import logging
import math
import warnings
from typing import Dict, Iterator, List, Optional, Set, Tuple, Union

import numpy as np

from qgis.PyQt.QtCore import QRectF
from qgis.PyQt.QtCore import pyqtSignal, QMimeData, QModelIndex, QSortFilterProxyModel, Qt
from qgis.PyQt.QtGui import QColor, QStandardItem, QStandardItemModel
from qgis.PyQt.QtWidgets import QApplication
from qgis.PyQt.QtWidgets import QGraphicsSceneMouseEvent
from qgis.PyQt.QtXml import QDomDocument, QDomElement
from qgis.core import QgsExpression, QgsExpressionContext, QgsExpressionContextScope, QgsExpressionContextUtils, \
    QgsFeature, QgsFeatureRenderer, QgsFeatureRequest, QgsField, QgsMarkerSymbol, QgsProject, QgsProperty, \
    QgsReadWriteContext, QgsRenderContext, QgsSingleSymbolRenderer, QgsSymbol, QgsVectorLayer, QgsVectorLayerCache
from .spectrallibraryplotitems import SpectralProfilePlotItem, SpectralViewBox
from .spectralprofilecandidates import CUSTOM_PROPERTY_CANDIDATE_FIDs, SpectralProfileCandidates
from ..core import profile_field_indices, profile_field_list, profile_fields, is_profile_field
from ..core.spectralprofile import decodeProfileValueDict
from ..gui.spectrallibraryplotitems import PlotUpdateBlocker, SpectralProfilePlotDataItem, SpectralProfilePlotWidget
from ..gui.spectrallibraryplotmodelitems import GeneralSettingsGroup, ProfileColorPropertyItem, \
    ProfileVisualizationGroup, PropertyItem, PropertyItemGroup, RasterRendererGroup, SpectralProfileLayerFieldItem
from ..gui.spectrallibraryplotunitmodels import SpectralProfilePlotXAxisUnitModel
from ..gui.spectralprofilefieldmodel import SpectralProfileFieldListModel
from ...plotstyling.plotstyling import PlotStyle
from ...pyqtgraph.pyqtgraph import (LegendItem, mkBrush, mkPen, PlotCurveItem, PlotDataItem, ScatterPlotItem,
                                    SpotItem, FillBetweenItem, SignalProxy)
from ...pyqtgraph.pyqtgraph.GraphicsScene.mouseEvents import HoverEvent, MouseClickEvent
from ...signalproxy import SignalProxyUndecorated
from ...unitmodel import BAND_INDEX, BAND_NUMBER, datetime64, UnitConverterFunctionModel, UnitWrapper
from ...utils import convertDateUnit, xy_pair_matrix

logger = logging.getLogger(__name__)


class SpectralProfilePlotModelProxyModel(QSortFilterProxyModel):

    def __init__(self, *args, **kwds):
        super(SpectralProfilePlotModelProxyModel, self).__init__(*args, **kwds)
        self.setRecursiveFilteringEnabled(True)
        self.setFilterCaseSensitivity(Qt.CaseInsensitive)


def func_mean(x, Y):
    return x, np.nanmean(Y, axis=1)


def func_max(x, Y):
    return x, np.nanmax(Y, axis=1)


def func_min(x, Y):
    return x, np.nanmin(Y, axis=1)


def func_quantile(x, Y, q):
    return x, np.nanquantile(Y, q, axis=1)


def func_stdev(x, Y):
    return x, np.nanstd(Y, axis=1)


def func_rmse(x, Y):
    return x, np.sqrt(np.nanmean((Y - np.nanmean(Y, axis=1, keepdims=True)) ** 2, axis=1))


def func_range(x, Y):
    return x, np.nanmax(Y, axis=1) - np.nanmin(Y, axis=1)


def func_mae(x, Y):
    return x, np.nanmean(np.abs(Y - np.nanmean(Y, axis=1, keepdims=True)), axis=1)


def func_count(x, Y):
    return x, np.sum(np.isfinite(Y), axis=1)


class StatisticViews(enum.Flag):
    plot1 = enum.auto()
    plot2 = enum.auto()


STATS_FUNCTIONS = {
    'mean': func_mean,
    'max': func_max,
    'min': func_min,
    'stdev': func_stdev,
    'rmse': func_rmse,
    'mae': func_mae,
    'q1': lambda x, Y: func_quantile(x, Y, 0.25),
    'q3': lambda x, Y: func_quantile(x, Y, 0.75),
    'median': lambda x, Y: func_quantile(x, Y, 0.50),
    'count': func_count,
    'range': func_range,
}

NORMALIZED_VIEW = ['stdev', 'rmse', 'mae', 'count', 'range']


class SpectralProfilePlotModel(QStandardItemModel):
    CIX_NAME = 0
    CIX_VALUE = 1

    sigProgressChanged = pyqtSignal(float)
    sigPlotWidgetStyleChanged = pyqtSignal()
    sigMaxProfilesExceeded = pyqtSignal()
    sigOpenAttributeTableRequest = pyqtSignal(str)
    sigOpenLayerPropertiesRequest = pyqtSignal(str)
    sigOpenSpectralProcessingRequest = pyqtSignal(str)
    sigProfileCandidatesChanged = pyqtSignal()
    sigLayersChanged = pyqtSignal()

    NOT_INITIALIZED = -1
    MAX_PROFILES_DEFAULT: int = 516

    class UpdateBlocker(object):
        """Blocks plot updates and proxy signals"""

        def __init__(self, plotModels: List['SpectralProfilePlotModel']):
            if isinstance(plotModels, SpectralProfilePlotModel):
                plotModels = [plotModels]

            self.mPlotModels: List[SpectralProfilePlotModel] = plotModels
            self.mWasBlocked: List[bool] = [False for m in plotModels]

        def __enter__(self):
            for i, model in enumerate(self.mPlotModels):
                self.mWasBlocked[i] = model.blockUpdates(True)

                for lid, signals in model.mSignalProxies.items():
                    for signal in signals:
                        signal.blockSignal = True

        def __exit__(self, exc_type, exc_value, tb):

            for wasBlocked, model in zip(self.mWasBlocked, self.mPlotModels):
                model.blockUpdates(wasBlocked)
                for lid, signals in model.mSignalProxies.items():
                    for signal in signals:
                        signal.blockSignal = False

    def __init__(self, *args, **kwds):

        super().__init__(*args, **kwds)

        self.mBlockUpdates: bool = False
        self.mAddProfileCandidatesAutomatically: bool = False

        self.mSTATS_ITEMS = []

        SpectralProfileCandidates.SHARED_SIGNALS.candidatesChanged.connect(self.onCandidatesChanged)
        # self.sigProfileCandidatesChanged.connect(self.updatePlot)
        # allows overwriting automatic generated plot styles
        # self.mPROFILE_CANDIDATE_STYLES: Dict[Tuple[str, str], Dict[int, PlotStyle]] = {}

        self.mHoverHTML: Dict[SpotItem, str] = dict()
        self.mSELECTED_SPOTS: Dict[str, Tuple[int, int]] = dict()

        self.mLastSettings: dict = dict()
        self.mLastReferencedColumns: dict = dict()
        self.mLayerCaches: Dict[str, QgsVectorLayerCache] = dict()
        self.nUpdates: int = 0

        self.mSignalProxies: Dict[str, List[SignalProxy]] = dict()
        self.mModelItems: Set[PropertyItemGroup] = set()

        self.mProject: Optional[QgsProject] = None
        self.setProject(QgsProject.instance())
        # self.mProject.layersWillBeRemoved.connect(self.onLayersWillBeRemoved)

        # # workaround https://github.com/qgis/QGIS/issues/45228
        self.mStartedCommitEditWrapper: bool = False

        # data cache organized by: level1: layer id (str),
        #                          level2: attribute field (int),
        #                          level3: feature id (int)             = raw data
        #                                  (feature id (int), xUnit (str))  = unit data
        #                          items
        self.mCACHE_PROFILE_DATA: Dict[
            str, Dict[int, Dict[Union[int, Tuple[int, str]], Union[None, dict, int]]]] = dict()
        self.mEnableCaching: bool = True
        self.mProfileFieldModel: SpectralProfileFieldListModel = SpectralProfileFieldListModel()

        self.mPlotWidget: Optional[SpectralProfilePlotWidget] = None

        symbol = QgsMarkerSymbol.createSimple({'name': 'square', 'color': 'white'})

        try:
            self.mDefaultSymbolRenderer = QgsSingleSymbolRenderer(symbol)
        except TypeError:
            self.mDefaultSymbolRenderer = QgsSingleSymbolRenderer(symbol, None)

        hdr0 = QStandardItem('Name')
        hdr0.setToolTip('Visualization property names')
        hdr1 = QStandardItem('Value')
        hdr1.setToolTip('Visualization property values')
        self.setHorizontalHeaderItem(0, hdr0)
        self.setHorizontalHeaderItem(1, hdr1)

        """
        self.mPropertyTooltips = {
            self.PIX_FIELD: 'Field with profile values.',
            self.PIX_LABEL: 'Field/Expression to generate profile names.',
            self.PIX_COLOR: 'Field/Expression to generate profile colors.',
            self.PIX_STYLE: 'Profile styling.',
            self.PIX_FILTER: 'Filter to exclude/include profiles. If empty, all features are used.'

        }"""

        self.mChangedFIDs: Set[int] = set()
        self.mChangedAttributes: Set[Tuple[int, int]] = set()
        self.mLastEditCommand: str = None
        # self.mPlotDataItems: List[SpectralProfilePlotDataItem] = list()

        # Update plot data and colors

        # .mCache2ModelData: Dict[MODEL_DATA_KEY, dict] = dict()
        # mCache2ModelData[(fid, fidx, modelId, xunit))] -> dict
        # self.mCache3PlotData: Dict[PLOT_DATA_KEY, dict] = dict()

        self.mUnitConverterFunctionModel = UnitConverterFunctionModel.instance()

        self.mXUnitModel: SpectralProfilePlotXAxisUnitModel = SpectralProfilePlotXAxisUnitModel.instance()
        self.mXUnit: UnitWrapper = self.mXUnitModel.findUnitWrapper(BAND_NUMBER)
        self.mXUnitInitialized: bool = False
        self.mShowSelectedFeaturesOnly: bool = False

        self.mGeneralSettings = GeneralSettingsGroup()

        # self.mProfileCandidates = ProfileCandidateGroup()
        self.insertPropertyGroup(0, self.mGeneralSettings)
        # self.insertPropertyGroup(1, self.mProfileCandidates)

        self.setMaxProfiles(self.MAX_PROFILES_DEFAULT)
        self._update_rate_limit = 60
        self.itemChanged.connect(self.onItemChanged)
        self.itemChanged.connect(self.updatePlotIfChanged)
        self.rowsInserted.connect(self.updatePlotIfChanged)
        self._standardProxySignals = [
            # SignalProxy(self.itemChanged, rateLimit=self._update_rate_limit, slot=self.onItemChanged),
            # SignalProxy(self.itemChanged, rateLimit=self._update_rate_limit, slot=self.updatePlotIfChanged),
            # SignalProxy(self.rowsInserted, rateLimit=self._update_rate_limit, slot=self.updatePlotIfChanged)
        ]

        style = PlotStyle()
        style.linePen.setStyle(Qt.SolidLine)
        fg = self.generalSettings().foregroundColor()
        style.setLineColor(fg)
        style.setMarkerColor(fg)
        style.setMarkerSymbol(None)
        style.setAntialias(self.mGeneralSettings.antialias())
        style.setBackgroundColor(self.generalSettings().backgroundColor())

        self.mDefaultProfileStyle = style

        style = PlotStyle()
        style.linePen.setStyle(Qt.SolidLine)
        style.linePen.setWidth(2)
        style.setLineColor('green')
        style.setAntialias(self.mGeneralSettings.antialias())
        self.mDefaultProfileCandidateStyle = style

        self.mCurrentSelectionColor: QColor = QColor('white')

    def onCandidatesChanged(self, layer_ids: List[str]):
        s = ""

        # QApplication.processEvents()
        # import gc
        # gc.collect()
        # for d in [d for d in gc.get_objects() if
        #           isinstance(d, (SpectralProfilePlotModel))]:
        #     if d != self:
        #         for r in gc.get_referrers(d):
        #             for r2 in gc.get_referrers(r):
        #                 for r3 in gc.get_referrers(r2):
        #                     s = ""

        for layer in self.spectralLibraries():
            if layer.id() in layer_ids:
                if not self.mBlockUpdates:
                    self.updatePlot()
                self.sigProfileCandidatesChanged.emit()
                break

    @classmethod
    def fromSettingsMap(cls, settings: dict, project: Optional[QgsProject] = None):

        if project is None:
            project = QgsProject.instance()

        model = SpectralProfilePlotModel()
        model.blockUpdates(True)
        model.setProject(project)
        model.mGeneralSettings.fromMap(settings.get('general', {}))
        model.blockUpdates(False)
        visGrps = []
        for visSettings in settings.get('visualizations', []):

            field_name = visSettings.get('field_name')
            layer_id = visSettings.get('layer_id')
            layer_name = visSettings.get('layer_name')
            layer_src = visSettings.get('layer_source')
            layer_provider = visSettings.get('layer_provider')
            layer = project.mapLayer(layer_id)
            if not isinstance(layer, QgsVectorLayer):
                for lid, lyr in project.mapLayers().items():
                    if lyr.source() == layer_src:
                        layer = lyr
                        break
            if not isinstance(layer, QgsVectorLayer):
                lyr = QgsVectorLayer(layer_src, layer_name, layer_provider)
                if lyr.isValid():
                    layer = lyr

            if isinstance(layer, QgsVectorLayer) and field_name in layer.fields().names():
                vis = ProfileVisualizationGroup()
                vis.setProject(project)
                vis.setLayerField(layer, field_name)

                vis.setFilterExpression(visSettings.get('filter_expression', ''))
                vis.setColorExpression(visSettings.get('color_expression', ''))
                vis.setLabelExpression(visSettings.get('label_expression', ''))
                visGrps.append(vis)

        if len(visGrps) > 0:
            model.insertPropertyGroup(-1, visGrps)

        return model

    def settingsMap(self) -> dict:
        """
        Returns the plot settings as JSON-serializable dictionary.
        """
        settings = dict()
        settings['general'] = self.mGeneralSettings.asMap()
        settings['general']['x_unit'] = str(self.xUnit().unit)
        # settings['candidates'] = self.profileCandidates().asMap()
        settings['visualizations'] = [v.asMap() for v in self.visualizations()
                                      if v.isVisible() and v.isComplete()]

        if True:
            dumps = json.dumps(settings, indent=4, ensure_ascii=False)
        return settings

    def updatePlotIfChanged(self, *args):
        old_settings = self.mLastSettings
        new_settings = self.settingsMap()
        if new_settings != old_settings:
            self.mLastSettings = new_settings

            g_new = new_settings.get('general', {})
            g_old = old_settings.get('general', {})

            # do the light work
            w: Optional[SpectralProfilePlotWidget] = self.plotWidget()
            if g_new != g_old and isinstance(w, SpectralProfilePlotWidget):

                # selection color
                w.setSelectionColor(g_new['color_sc'])

                self.mCurrentSelectionColor = QColor(g_new['color_sc'])

                w.setCrosshairColor(g_new['color_ch'])

                w.setShowCrosshair(g_new['show_crosshair'])
                w.setForegroundColor(g_new['color_fg'])
                w.setBackgroundColor(g_new['color_bg'])
                legend1 = w.mLegendItem1
                legend2 = w.mLegendItem2

                for legend, pi in [(legend1, w.plotItem1),
                                   (legend2, w.plotItem2)]:
                    g_legend = g_new.get('legend', {'show': False})

                    if isinstance(legend, LegendItem):
                        legend.setLabelTextColor(QColor(g_new['color_fg']))
                        legend.setLabelTextSize(g_legend.get('text_size', '9px'))
                        legend.setColumnCount(g_legend.get('columns', 1))
                        show_legend = g_legend.get('show', False)
                        update_legend_items = legend.isVisible() != show_legend
                        if show_legend:
                            legend.setVisible(True)
                            pi.legend = legend
                            if update_legend_items:
                                legend.clear()
                                for item in pi.items:
                                    if isinstance(item, PlotDataItem):
                                        legend.addItem(item, item.name())
                        else:
                            legend.setVisible(False)
                            legend.clear()
                            pi.legend = None

                    # pen = legend.pen()
                    # pen.setColor(QColor(g_new['color_fg']))
                    # legend.setPen(pen)

                    # legend.update()

            # check for settings that require a re-plot with time-consuming
            # reloading of vector layer data
            update_heavy = False
            update_stats = False

            # 1. check general settings
            requires_replot = ['x_unit',
                               'sort_bands', 'show_bad_bands',
                               'max_profiles', '']
            requires_restats = ['statistics']
            for k in set(g_old.keys()) | set(g_new.keys()):
                if g_old.get(k, None) != g_new.get(k, None):
                    if k in requires_replot:
                        update_heavy = True
                        update_stats = True
                        break
                    elif k in requires_restats:
                        update_stats = True

            # 2. check visualization settings
            v_old = old_settings.get('visualizations', {})
            v_new = new_settings.get('visualizations', {})
            if not update_heavy:
                if len(v_old) != len(v_new):
                    update_heavy = True
                elif len(v_old) > 0:
                    # check if visualization requires a reloading of vector layer
                    requires_replot = ['vis_id', 'name', 'field_name', 'layer_id',
                                       'layer_source', 'layer_name', 'layer_provider', 'label_expression',
                                       'filter_expression', 'show_candidates', 'candidate_style',
                                       'color_expression', 'tooltip_expression', 'plot_style']
                    requires_restats = ['statistics']
                    for v_o, v_n in zip(v_old, v_new):
                        for k in set(v_o.keys()) | set(v_n.keys()):
                            if v_o.get(k) != v_n.get(k):
                                if k in requires_replot:
                                    update_heavy = True
                                    update_stats = True
                                    break
                                elif k in requires_restats:
                                    update_stats = True

            if update_heavy:
                # redraw profiles with loading from vector layer
                self.updatePlot(settings=new_settings)
                self.updateStatistics(new_settings)

            elif update_stats:
                # recalculate statistic profile, which are derived from data of previously plotted profiles
                self.updateStatistics(new_settings)

    def dict_differences(self, dict1, dict2):
        # Find keys that are in both dictionaries but have different values
        common_keys = set(dict1.keys()) & set(dict2.keys())
        diff = {k: (dict1[k], dict2[k]) for k in common_keys if dict1[k] != dict2[k]}

        # Find keys that are only in dict1
        only_in_dict1 = {k: dict1[k] for k in dict1.keys() - dict2.keys()}

        # Find keys that are only in dict2
        only_in_dict2 = {k: dict2[k] for k in dict2.keys() - dict1.keys()}

        # Combine all differences into a single dictionary
        differences = {
            'changed_values': diff,
            'only_in_dict1': only_in_dict1,
            'only_in_dict2': only_in_dict2
        }

        return differences

    def blockUpdates(self, b: bool) -> bool:
        state = self.mBlockUpdates
        self.mBlockUpdates = b
        return state

    def updatesBlocked(self) -> bool:
        return self.mBlockUpdates

    def createPropertyColor(self, property: QgsProperty, fid: int = None) -> QColor:
        assert isinstance(property, QgsProperty)
        defaultColor = QColor('white')
        renderer: QgsFeatureRenderer = None
        context = QgsExpressionContext()
        speclib = self.speclib()
        if isinstance(speclib, QgsVectorLayer):
            context = speclib.createExpressionContext()
            if speclib.featureCount() > 0:
                feature: QgsFeature = None
                if fid:
                    feature = speclib.getFeature(fid)
                if not isinstance(feature, QgsFeature):
                    for f in speclib.getFeatures():
                        feature = f
                        break
                context.setFeature(feature)

                renderContext = QgsRenderContext()
                if isinstance(speclib.renderer(), QgsFeatureRenderer):
                    renderer = speclib.renderer().clone()

                    renderer.startRender(renderContext, speclib.fields())
                    symbol = renderer.symbolForFeature(feature, renderContext)
                    if isinstance(symbol, QgsSymbol):
                        context.appendScope(QgsExpressionContextScope(
                            symbol.symbolRenderContext().expressionContextScope()))

        color, success = property.valueAsColor(context, defaultColor=defaultColor)
        if isinstance(renderer, QgsFeatureRenderer):
            renderer.stopRender(renderContext)

        return color

    def setProject(self, project: QgsProject):
        assert isinstance(project, QgsProject)

        if self.mProject == project:
            return
        if isinstance(self.mProject, QgsProject):
            self.mProject.layersWillBeRemoved.disconnect(self.onLayersWillBeRemoved)

        self.mProject = project
        for item in self.mModelItems:
            if isinstance(item, PropertyItemGroup):
                item.setProject(project)
        self.mProject.layersWillBeRemoved.connect(self.onLayersWillBeRemoved)

    def project(self) -> QgsProject:
        return self.mProject

    def onLayersWillBeRemoved(self, layerIds: List[str]):

        to_remove = []
        for vis in self.visualizations():
            if vis.layerId() in layerIds:
                to_remove.append(vis)
        if len(to_remove) > 0:
            self.removePropertyItemGroups(to_remove)

        to_remove = [r for r in self.layerRendererVisualizations() if r.layerId() in layerIds]
        for r in to_remove:
            r.onLayerRemoved()

    def rawData(self,
                layer_id: str,
                fieldIndex: int,
                feature: Union[int, QgsFeature]) -> Union[None, int, dict]:
        """
        Returns the raw data struct of a spectral profile field, after it has been
        extracted from a QgsFeature.
        """
        # NA = not initialized
        # None = not available
        NI = SpectralProfilePlotModel.NOT_INITIALIZED

        if isinstance(feature, int):
            return self.mCACHE_PROFILE_DATA[layer_id][fieldIndex].get(feature, NI)

        else:
            if not feature.isValid():
                return None

            raw_data = self.mCACHE_PROFILE_DATA[layer_id][fieldIndex].get(feature.id(), NI)

            if raw_data == NI or not self.mEnableCaching:
                # load profile data
                d: dict = decodeProfileValueDict(feature.attribute(fieldIndex))
                if d is None or len(d) == 0 or 'y' not in d.keys():
                    # no profile
                    raw_data = None
                else:
                    raw_data = d
                    if raw_data.get('x', None) is None:
                        raw_data['x'] = list(range(len(raw_data['y'])))
                        raw_data['xUnit'] = BAND_INDEX

                    # convert None values to NaN so that numpy arrays will become numeric
                    raw_data['y'] = [np.nan if v is None or not math.isfinite(v) else v for v in raw_data['y']]

                self.mCACHE_PROFILE_DATA[layer_id][fieldIndex][feature.id()] = raw_data
            return raw_data

    def plotData2(self, layer_id: str, fieldIndex: int, feature: QgsFeature, xUnit: str) -> Optional[dict]:

        # raw_data = feature.attributes()[fieldIndex]
        # if raw_data is None:
        #    return None

        try:
            raw_data = self.rawData(layer_id, fieldIndex, feature)
            # d: dict = decodeProfileValueDict(feature.attribute(fieldIndex))
            if raw_data in [SpectralProfilePlotModel.NOT_INITIALIZED, None]:
                return None
            return self.profileDataToXUnit(raw_data, xUnit)
        except Exception as e:
            return None

    def plotData1(self, layer_id: str, fieldIndex: int, feature: QgsFeature, xUnit: str) -> Optional[dict]:
        """
        Returns the data struct of a deserialized spectral profile, converted to xUnit
        """
        if not feature.isValid():
            return None
        NI = SpectralProfilePlotModel.NOT_INITIALIZED
        # NA = not initialized
        # None = not available
        id_raw_data = feature.id()
        id_unit_data = (feature.id(), xUnit)

        FIELD_DATA = self.mCACHE_PROFILE_DATA[layer_id][fieldIndex]
        plotData = FIELD_DATA.get(id_unit_data, NI)
        if plotData == NI or not self.mEnableCaching:
            rawData = self.rawData(layer_id, fieldIndex, feature)

            if rawData is None:
                # cannot load raw data
                plotData = None

            else:
                # convert profile data to xUnit
                # if not possible, entry will be set to None
                plotData = self.profileDataToXUnit(rawData, xUnit)
            FIELD_DATA[id_unit_data] = plotData

        return plotData

    def plotWidget(self) -> Optional[SpectralProfilePlotWidget]:
        return self.mPlotWidget

    sigShowSelectedFeaturesOnlyChanged = pyqtSignal(bool)

    def setShowLegend(self, b: bool):
        """
        Show or hides the legend
        :param b: bool
        """
        self.generalSettings().setShowLegend(b)

    def setShowSelectedFeaturesOnly(self, b: bool):
        if self.mShowSelectedFeaturesOnly != b:
            self.mShowSelectedFeaturesOnly = b
            self.updatePlot()
            self.sigShowSelectedFeaturesOnlyChanged.emit(self.mShowSelectedFeaturesOnly)

    def showToolTips(self) -> bool:
        return self.mGeneralSettings.showToolTips()

    def showSelectedFeaturesOnly(self) -> bool:
        return self.mShowSelectedFeaturesOnly

    sigXUnitChanged = pyqtSignal(UnitWrapper)

    def setXUnit(self, unit: Union[str, UnitWrapper]):
        unit = self.mXUnitModel.findUnitWrapper(unit)
        if self.mXUnit != unit:

            self.mXUnit = unit

            #  baseUnit = UnitLookup.baseUnit(unit_)
            labelName = self.mXUnitModel.unitData(unit, Qt.DisplayRole)
            self.mPlotWidget.xAxis().setUnit(unit, labelName=labelName)
            # self.mPlotWidget.clearInfoScatterPoints()
            # self.mPlotWidget.xAxis().setLabel(text='x values', unit=unit_)
            for bv in self.layerRendererVisualizations():
                bv.setXUnit(self.mXUnit.unit)
            self.updatePlotIfChanged()
            self.sigXUnitChanged.emit(self.mXUnit)

    def xUnit(self) -> UnitWrapper:
        return self.mXUnit

    def writeXml(self, parent: QDomElement, context: QgsReadWriteContext) -> QDomElement:
        doc: QDomDocument = parent.ownerDocument()

        if not parent.tagName() == 'Visualizations':
            parent = doc.createElement('Visualizations')
            doc.appendChild(parent)

        for v in self.visualizations():
            nV: QDomElement = doc.createElement('Visualization')
            parent.appendChild(nV)
            v.writeXml(nV, context)

        return parent

    def readXml(self, parent: QDomElement, context: QgsReadWriteContext):
        if not parent.tagName() == 'Visualizations':
            parent = parent.firstChildElement('Visualizations')

        if parent.isNull():
            return False

        nV = parent.firstChildElement('Visualization').toElement()

        # clean old visualizations
        self.removePropertyItemGroups(self.visualizations())

        while not nV.isNull():
            vis = ProfileVisualizationGroup()
            vis.initWithPlotModel(self)
            vis.readXml(nV, context)
            self.insertPropertyGroup(-1, vis)
            nV = nV.nextSibling().toElement()

    def setPlotWidget(self, plotWidget: SpectralProfilePlotWidget):
        self.mPlotWidget = plotWidget
        self.mPlotWidget.sigPlotDataItemSelected.connect(self.onPlotSelectionRequest)
        self.mPlotWidget.xAxis().setUnit(self.xUnit())  # required to set x unit in plot widget
        self.mXUnitInitialized = False

        vb1: SpectralViewBox = plotWidget.plotItem1.getViewBox()
        vb2: SpectralViewBox = plotWidget.plotItem1.getViewBox()

        vb1.sigRectDrawn.connect(self.onRectDrawn)

        bg = plotWidget.backgroundBrush().color()
        fg = plotWidget.xAxis().pen().color()
        general = self.generalSettings()

        general.mP_BG.setProperty(QgsProperty.fromValue(bg))
        general.mP_FG.setProperty(QgsProperty.fromValue(fg))

    sigMaxProfilesChanged = pyqtSignal(int)

    def setMaxProfiles(self, n: int):
        self.generalSettings().setMaximumProfiles(n)

    def maxProfiles(self) -> int:
        return self.generalSettings().maximumProfiles()

    def close(self):
        """
        Can be used to deregister signals and disconnect slots.
        """
        for proxies in self.mSignalProxies.values():
            for proxy in proxies:
                proxy.disconnect()
        self.mSignalProxies.clear()
        SpectralProfileCandidates.SHARED_SIGNALS.candidatesChanged.disconnect(self.onCandidatesChanged)

    def __len__(self) -> int:
        return len(self.visualizations())

    def __iter__(self) -> Iterator[ProfileVisualizationGroup]:
        return iter(self.visualizations())

    def profileFieldsModel(self) -> SpectralProfileFieldListModel:
        return self.mProfileFieldModel

    def propertyGroups(self) -> List[PropertyItemGroup]:
        groups = []
        for r in range(self.rowCount()):
            grp = self.invisibleRootItem().child(r, 0)
            if isinstance(grp, PropertyItemGroup):
                groups.append(grp)
        return groups

    def layerRendererVisualizations(self) -> List[RasterRendererGroup]:
        return [v for v in self.propertyGroups() if isinstance(v, RasterRendererGroup)]

    def sourceLayers(self) -> List[QgsVectorLayer]:
        """
        Returns the set source layers which is used to visualize profiles from
        """
        layers = []
        for vis in self.visualizations():
            lyr = vis.layer()
            if isinstance(lyr, QgsVectorLayer) and lyr.isValid() and lyr not in layers:
                layers.append(lyr)
        return layers

    def visualizations(self) -> List[ProfileVisualizationGroup]:

        return [v for v in self.propertyGroups() if isinstance(v, ProfileVisualizationGroup)]

    def spectralLibraries(self) -> List[QgsVectorLayer]:

        speclibs = []

        for vis in self.visualizations():
            layer = vis.layer()
            if isinstance(layer, QgsVectorLayer) and layer not in speclibs:
                speclibs.append(layer)
        return speclibs

    def insertPropertyGroup(self,
                            index: Union[int, QModelIndex],
                            items: Union[PropertyItemGroup, List[PropertyItemGroup]],
                            ):

        # map to model index within a group of same zValues
        if isinstance(items, PropertyItemGroup):
            items = [items]
        _index = None

        if isinstance(index, QModelIndex):
            index = index.row()

        layers_changed = False
        for i, item in enumerate(items):
            assert isinstance(item, PropertyItemGroup)

            item.setProject(self.mProject)
            # remove items if requestRemoval signal is triggered
            # item.signals().requestRemoval.connect(lambda *arg, itm=item: self.removePropertyItemGroups(itm))
            # item.signals().requestPlotUpdate.connect(self.updatePlot)

            old_order: List[PropertyItemGroup] = self.propertyGroups()
            idx = index + i
            if idx < 0 or idx > len(old_order):
                idx = len(old_order)
            old_order.insert(idx, item)

            # ensure that items are ordered by zLevel,
            # i.e. zLevel = 0 items first, zLevel = 1 afterwards etc.
            GROUPS: dict = dict()
            for g in old_order:
                GROUPS[g.zValue()] = GROUPS.get(g.zValue(), []) + [g]

            new_group_order = []
            for zLevel in sorted(GROUPS.keys()):
                new_group_order += GROUPS[zLevel]

            if isinstance(item, ProfileVisualizationGroup):
                layers_changed = True

            self.mModelItems.add(item)
            self.insertRow(new_group_order.index(item), item)

        if layers_changed:
            self.updateSpeclibConnections()
            self.sigLayersChanged.emit()

    def removePropertyItemGroups(self, groups: Union[PropertyItemGroup, List[PropertyItemGroup]]):

        if isinstance(groups, PropertyItemGroup):
            groups = [groups]

        if len(groups) > 0:
            for v in groups:
                if not (isinstance(v, PropertyItemGroup) and v.isRemovable()):
                    continue
                assert v in self.mModelItems

                v.disconnectGroup()

                for r in range(self.rowCount()):
                    if self.invisibleRootItem().child(r, 0) == v:
                        self.mModelItems.remove(v)
                        self.takeRow(r)
                        break

            self.sigLayersChanged.emit()
            self.updateSpeclibConnections()
            self.updatePlot()

    def selectedCurveFeatures(self) -> Dict[str, set]:
        """
        Returns the layer and features ids related to selected profile curves in the plot
        :return:
        """
        result = dict()
        for item in self.mPlotWidget.spectralProfilePlotDataItems(is_selected=True):
            layer_id = item.layerID()
            layer_features = result.get(layer_id, set())
            layer_features.add(item.featureID())
            result[layer_id] = layer_features

        return result

    def onPointsHovered(self, item: ScatterPlotItem, points: List[SpotItem], event: HoverEvent, **kwarg):
        s = ""
        # print(item)
        # print(event)
        # info = f'{event.enter} {event.exit} {len(points)}'
        # self.mPlotWidget.mInfoHover.setHtml(info)
        # return

        if event.isExit():
            self.mHoverHTML.clear()
            self.mPlotWidget.mInfoHover.setHtml('')
        else:
            parent = item.parentItem()
            if isinstance(parent, SpectralProfilePlotDataItem):
                if len(points) > 0:
                    xu = self.xUnit().unit
                    self.mPlotWidget.xAxis().unit()
                    for spot in points:
                        txt = f'<i>{parent.name()}</i><br>[{spot.index()}] {spot.pos().x()}, {spot.pos().y()}'
                        self.mHoverHTML[parent] = txt
                else:
                    if parent in self.mHoverHTML:
                        self.mHoverHTML.pop(parent)

        n_max = 5
        html = []
        for i, txt in enumerate(self.mHoverHTML.values()):
            if i == n_max:
                html.append('...')
                break
            else:
                html.append(txt)
        self.mPlotWidget.mInfoHover.setHtml('<br>'.join(html))

    def onPointsClicked(self, item: PlotDataItem, spots: List[SpotItem], event: MouseClickEvent, **kwarg):
        """
        Handles the selection / unselection of spectral profile points
        """
        if isinstance(item, SpectralProfilePlotDataItem):
            lid = item.layerID()
            fid = item.featureID()

            OLD_SELECTION = self.mSELECTED_SPOTS.copy()
            new_spots = self.mSELECTED_SPOTS.get(lid, set())

            # Check for modifier keys
            modifiers = event.modifiers()
            has_ctrl = modifiers & Qt.KeyboardModifier.ControlModifier
            has_shift = modifiers & Qt.KeyboardModifier.ShiftModifier

            for spot in spots:
                k = (fid, spot.index())

                # Select-item logic
                if has_ctrl:
                    # toggle this spot only
                    if k in new_spots:
                        new_spots.remove(k)
                    else:
                        new_spots.add(k)

                elif has_shift:
                    # Handle SHIFT+click
                    # allways add to the existing selection
                    new_spots.add(k)
                else:
                    # this item is the new selection
                    self.mSELECTED_SPOTS.clear()
                    new_spots.clear()
                    new_spots.add(k)

            self.mSELECTED_SPOTS[lid] = new_spots

            if OLD_SELECTION != self.mSELECTED_SPOTS:
                self._updateSpotSelection(OLD_SELECTION)
        pass

    def onRectDrawn(self, srect: QRectF, ev: QGraphicsSceneMouseEvent):

        vb: SpectralViewBox = self.sender()

        if not isinstance(vb, SpectralViewBox):
            return

        pdi = vb.parentItem()
        if not isinstance(pdi, SpectralProfilePlotItem):
            return

        modifiers = ev.modifiers()
        has_ctrl = modifiers & Qt.KeyboardModifier.ControlModifier
        has_shift = modifiers & Qt.KeyboardModifier.ShiftModifier

        scene = self.mPlotWidget.scene()

        pi1 = self.mPlotWidget.plotItem1
        vb = pi1.getViewBox()

        srect2 = vb.mapRectToScene(srect)

        # get all items whose shape intersects the rect
        # items1 = vb.scene().items(srect, Qt.IntersectsItemShape, Qt.AscendingOrder)

        curves = [item
                  for item in scene.items(srect2, Qt.IntersectsItemShape, Qt.AscendingOrder)
                  if isinstance(item, PlotCurveItem)
                  and isinstance(item.parentItem(), SpectralProfilePlotDataItem)]
        srect2 = vb.mapSceneToView(srect).boundingRect().normalized()

        # need a more precise intersection test
        def intersects(item: PlotDataItem, rect: QRectF) -> bool:
            x, y = item.getData()
            # p = item.getPath()
            # b1 = p.intersects(rect)

            from qgis.core import QgsLineString, QgsGeometry, QgsRectangle
            ls = QgsGeometry(QgsLineString(x, y))

            rect2 = QgsGeometry.fromWkt(QgsRectangle(rect).asWktPolygon())
            b2 = ls.intersects(rect2)
            return b2

        pdis = [c.parentItem() for c in curves if intersects(c, srect2)]

        selection_changed = False
        if has_shift:
            # add to selection
            for item in pdis:
                item.setCurveIsSelected(True)

            selection_changed = True
        elif has_ctrl:
            # remove from selection
            for item in pdis:
                item.setCurveIsSelected(False)
            selection_changed = True

        if selection_changed:
            self._updateFeatureSelectionFromCurves()

    def onCurveClicked(self, item: PlotCurveItem, event: MouseClickEvent):
        """
        Handles the selection / unselection of spectral profiles
        :param item:
        :param event:
        :return:
        """
        parent = item.parentItem()
        if isinstance(parent, SpectralProfilePlotDataItem):
            is_selected = parent.curveIsSelected()

            old_selection = self.selectedCurveFeatures()

            # Check for modifier keys
            modifiers = event.modifiers()
            has_ctrl = modifiers & Qt.KeyboardModifier.ControlModifier
            has_shift = modifiers & Qt.KeyboardModifier.ShiftModifier

            # Select-item logic
            if has_ctrl:
                # toggle this item only
                parent.setCurveIsSelected(not is_selected)
            elif has_shift:
                # Handle SHIFT+click
                # allways add to existing selection
                parent.setCurveIsSelected(True)
            else:
                # this item is the new selection
                # 1. clear previous
                for item in self.mPlotWidget.spectralProfilePlotDataItems(is_selected=True):
                    item.setCurveIsSelected(False)
                # 2. this item is the new selection
                parent.setCurveIsSelected(True)

            new_selection = self.selectedCurveFeatures()

            if old_selection != new_selection and not self.showSelectedFeaturesOnly():
                self._updateFeatureSelectionFromCurves()

                if False:
                    layers = set(old_selection.keys()) | set(new_selection.keys())

                    # 1. select layer features that have a selected curve
                    for layerID in layers:
                        layer = self.project().mapLayer(layerID)
                        if isinstance(layer, QgsVectorLayer):
                            new_ids = new_selection.get(layerID, set())
                            old_ids = old_selection.get(layerID, set())

                            layer.selectByIds(list(new_ids))

                    # 2. select curves that have a selected layer feature
                    self._updateCurveSelectionFromFeatures()

    def _updateSpotSelection(self, old_selection: dict):

        for item in self.plotWidget().spectralProfilePlotDataItems():
            lid = item.layerID()
            fid = item.featureID()
            if lid in self.mSELECTED_SPOTS or lid in old_selection:

                new_pts = self.mSELECTED_SPOTS.get(lid, set())
                old_pts = old_selection.get(lid, set())
                # item.scatter.setPointsVisible()

                to_unset = old_pts.difference(new_pts)
                to_set = new_pts.difference(old_pts)
                for pt in to_unset:
                    pass
                for pt in to_set:
                    pass
            s = ""

    def _updateFeatureSelectionFromCurves(self):
        """
        Call to select feature which have a selected curve
        :return:
        """
        SELECTED_FEATURES = dict()
        for item in self.mPlotWidget.spectralProfilePlotDataItems(is_selected=True):
            lid = item.layerID()
            fid = item.featureID()
            SELECTED_FEATURES[lid] = SELECTED_FEATURES.get(lid, []) + [fid]

        for lid, fids in SELECTED_FEATURES.items():
            layer = self.project().mapLayer(lid)
            if isinstance(layer, QgsVectorLayer) and layer.isValid():
                proxies = self.mSignalProxies.get(lid, [])
                for p in proxies:
                    p.blockSignal = True
                layer.selectByIds(list(set(fids)))
                for p in proxies:
                    p.blockSignal = False

    def _updateCurveSelectionFromFeatures(self):
        """
        Call this to select curves which relate to a selected vector layer feature
        """
        SELECTED_FEATURES = dict()

        for item in self.mPlotWidget.spectralProfilePlotDataItems():
            lid = item.layerID()
            fid = item.featureID()
            if lid not in SELECTED_FEATURES:
                layer = self.project().mapLayer(lid)
                if isinstance(layer, QgsVectorLayer):
                    SELECTED_FEATURES[lid] = layer.selectedFeatureIds()
                else:
                    SELECTED_FEATURES[lid] = []
            item.setCurveIsSelected(fid in SELECTED_FEATURES[lid])
        self.plotWidget().mLegendItem1.update()

    def updateStatistics(self, settings: Optional[dict] = None):
        """
        Update all curves that show statistics dervided from plotted curves, e.g. mean, stddev.
        :param settings:
        :return:
        """
        pw = self.plotWidget()

        if not isinstance(pw, SpectralProfilePlotWidget):
            return

        logger.debug('updateStatistics')

        if settings is None:
            settings = self.settingsMap()

        g_settings = settings.get('general', {})
        g_stats = g_settings.get('statistics', {})
        # calculate the statistic profiles for all mapped items

        show_stats = g_stats.get('show', False)
        show_normalized = g_stats.get('normalized', True)
        sort_bands = g_settings.get('sort_bands', False)
        antialias = g_settings.get('antialiasing', False)

        DT = dict()
        t0 = datetime.datetime.now()

        def add_dt(key: str, t0: datetime.datetime):
            dt = (datetime.datetime.now() - t0).total_seconds()
            dtl = DT.get(key, [])
            dtl.append(dt)
            DT[key] = dtl

        # collect data for each visualization

        p1: SpectralProfilePlotItem = pw.plotItem1
        p2: SpectralProfilePlotItem = pw.plotItem2

        # remove all stats profiles
        for item in self.mSTATS_ITEMS:
            if item in p1.items:
                p1.removeItem(item)
            elif item in p2.items:
                p2.removeItem(item)

        self.mSTATS_ITEMS.clear()

        ITEMS_PI1 = []
        ITEMS_PI2 = []

        DATA_PAIRS = dict()
        VIS_STATS = dict()

        # collect data from plottes SpectraProfilePlotDataItems
        vis_with_stats = []
        if show_stats:
            vis_with_stats.extend([
                vis for vis in settings.get('visualizations')
                if len(vis.get('statistics', {})) > 0])

        if len(vis_with_stats) > 0:
            vis_ids = [v['vis_id'] for v in vis_with_stats]
            t0 = datetime.datetime.now()
            for pdi in p1.spectralProfilePlotDataItems():
                if pdi.mVisID in vis_ids:
                    DATA_PAIRS[pdi.mVisID] = DATA_PAIRS.get(pdi.mVisID, []) + [(pdi.xData, pdi.yData)]
            add_dt('Collect XY Data', t0)
            # merge data into
            # x = 1d array with x values,
            # Y = 2d array with Y values to caluclate statistics from
            t1 = datetime.datetime.now()
            for vis_id in list(DATA_PAIRS.keys()):
                DATA_PAIRS[vis_id] = xy_pair_matrix(DATA_PAIRS[vis_id])
            add_dt('run xy_pair_matrix', t1)
            add_dt('Create XY_PAIR_MATRIZES total', t0)

            for vis in vis_with_stats:
                vis_id = vis['vis_id']
                vis_name = vis['name']
                if vis_id not in DATA_PAIRS:
                    continue

                x, Y = DATA_PAIRS[vis_id]

                t0 = datetime.datetime.now()
                for stat, style in vis['statistics'].items():
                    if isinstance(style, dict):
                        style: PlotStyle = PlotStyle.fromMap(style)
                    assert isinstance(style, PlotStyle)
                    assert isinstance(stat, str)

                    if stat not in STATS_FUNCTIONS:
                        continue

                    with warnings.catch_warnings():
                        warnings.simplefilter("ignore", category=RuntimeWarning)
                        x2, y2 = STATS_FUNCTIONS[stat](x, Y)

                    name = f'{vis_name} {stat}'

                    if stat not in NORMALIZED_VIEW:
                        item = PlotDataItem(x=x2.tolist(), y=y2.tolist(),
                                            name=name, antialias=antialias)
                        style.apply(item)
                        ITEMS_PI1.append(item)
                    else:
                        # stats like stddev, mae and rmse can be shown separately
                        # a) single curve in plot item 2
                        if show_normalized:
                            item = PlotDataItem(x=x2.tolist(), y=y2.tolist(),
                                                name=name, antialias=antialias)
                            style.apply(item)
                            ITEMS_PI2.append(item)

                        # b) area around the mean in plot 1
                        else:
                            x_mean, y_mean = func_mean(x, Y)
                            c_upper = PlotDataItem(x=x_mean.tolist(), y=(y_mean + y2).tolist(),
                                                   name=name, antialias=antialias)
                            c_lower = PlotDataItem(x=x_mean.tolist(), y=(y_mean - y2).tolist(),
                                                   name=name, antialias=antialias)
                            item = FillBetweenItem(c_upper, c_lower,
                                                   brush=mkBrush(style.lineColor()))

                            ITEMS_PI1.append(item)

                add_dt(f'Create VIS {vis_id} stats', t0)

        self.mSTATS_ITEMS.extend(ITEMS_PI1)
        self.mSTATS_ITEMS.extend(ITEMS_PI2)

        t0 = datetime.datetime.now()
        for item in ITEMS_PI1:
            p1.addItem(item)

        for item in ITEMS_PI2:
            p2.addItem(item)

        if len(ITEMS_PI2) > 0:
            p2.show()
        else:
            p2.hide()

        add_dt('Add/Show plot items', t0)

        infos = ['stats update durations:']
        for k, dtl in DT.items():
            dtl = np.asarray(dtl)
            infos.append(f'\t{k}: {dtl.sum():.2f} s  {dtl.mean():.3f}s n = {len(dtl)}')
        logger.debug('\n'.join(infos))

    def updatePlot(self,
                   settings: Optional[dict] = None):  #

        self.mCACHE_PROFILE_DATA.clear()

        if settings is None:
            settings = self.settingsMap()

        settings = settings.copy()
        if self.updatesBlocked():
            logger.debug('updatePlot - updateBlocked!')
            return

        if not isinstance(self.mPlotWidget, SpectralProfilePlotWidget):
            return

        logger.debug(f'update #{self.nUpdates}')

        self.nUpdates += 1
        xunit: str = self.xUnit().unit
        if xunit is None:
            xunit = BAND_NUMBER
        xunit: str = settings.get('x_unit', xunit)

        antialiasing = settings['general'].get('antialiasing', False)
        self.mCurrentSelectionColor = QColor(settings['general']['color_sc'])

        def func_selected_style(plotStyle: PlotStyle):
            style2 = plotStyle.clone()
            style2.setLineWidth(plotStyle.lineWidth() + 2)
            style2.setLineColor(self.mCurrentSelectionColor)
            return style2

        visualizations: List[dict] = settings['visualizations']
        layer_ids = []
        for vis in visualizations:
            lid = vis.get('layer_id')
            layer_ids.append(lid)

            if lid in self.mLayerCaches:
                continue
            else:
                # lsrc = vis.get('layer_source', speclib.source())
                lyr = self.project().mapLayer(lid)

                if isinstance(lyr, QgsVectorLayer) and lyr.isValid():
                    self.mLayerCaches[lid] = QgsVectorLayerCache(lyr, 1024)

        # prepare a profile data cache dict for each layer and spectral profile field
        for vis in visualizations:
            layer_cache: QgsVectorLayerCache = self.mLayerCaches[vis['layer_id']]
            layer = layer_cache.layer()
            field_name = vis['field_name']
            field_index = layer.fields().lookupField(field_name)
            layer_data_cache = self.mCACHE_PROFILE_DATA.get(layer.id(), dict())
            field_data_cache = layer_data_cache.get(field_index, dict())
            layer_data_cache[field_index] = field_data_cache
            self.mCACHE_PROFILE_DATA[layer.id()] = layer_data_cache

        # for v in self.visualizations():
        #    v.mPlotDataItems.clear()
        #    if v.isVisible() and v.isComplete() and v.speclib() == self.speclib():
        #        visualizations.append(v)

        # pdi_generator = PDIGenerator([], onProfileClicked=self.mPlotWidget.onProfileClicked)

        # request.setFilterFids(feature_priority)

        # PROFILE_DATA: Dict[tuple, dict] = dict()

        profile_limit_reached: bool = False
        max_profiles = self.generalSettings().maximumProfiles()
        show_bad_bands = self.generalSettings().showBadBands()
        sort_bands = self.generalSettings().sortBands()
        show_selected_only = self.showSelectedFeaturesOnly()

        PLOT_ITEMS: List[SpectralProfilePlotDataItem] = []

        DT = dict()

        def add_dt(key: str, t0: datetime.datetime):
            dt = (datetime.datetime.now() - t0).total_seconds()
            dtl = DT.get(key, [])
            dtl.append(dt)
            DT[key] = dtl

        t0 = datetime.datetime.now()

        for i_vis, vis in enumerate(visualizations):

            layer_cache: QgsVectorLayerCache = self.mLayerCaches[vis['layer_id']]
            layer = layer_cache.layer()
            layer_id = layer.id()
            vis_id = vis.get('vis_id')
            selected_fids = layer.selectedFeatureIds()

            candidate_fids = layer.customProperty(CUSTOM_PROPERTY_CANDIDATE_FIDs, [])

            referenced_aids = []
            color_expression = QgsExpression(vis['color_expression'])
            if color_expression.hasParserError():
                continue
            else:
                referenced_aids.extend(color_expression.referencedAttributeIndexes(layer.fields()))

            label_expression = QgsExpression(vis['label_expression'])
            if label_expression.expression() == '':
                label_expression.setExpression('$id')
            elif label_expression.hasParserError():
                continue
            else:
                referenced_aids.extend(label_expression.referencedAttributeIndexes(layer.fields()))

            filter_expression = QgsExpression(vis['filter_expression'])
            if filter_expression.expression() == '':
                filter_expression.setExpression('$id')
            elif filter_expression.hasParserError():
                continue
            else:
                referenced_aids.extend(filter_expression.referencedAttributeIndexes(layer.fields()))

            self.mLastReferencedColumns[layer_id] = set(referenced_aids)

            s = ""

            request = QgsFeatureRequest()
            request.setLimit(max_profiles)
            request.setFlags(QgsFeatureRequest.NoGeometry)

            if filter_expression:
                request.setFilterExpression(filter_expression.expression())

            if show_selected_only:
                request.setFilterFids(selected_fids)

            field_name = vis['field_name']
            field_index = layer.fields().lookupField(field_name)

            vis_context = QgsExpressionContext()
            vis_context.appendScope(QgsExpressionContextUtils.globalScope())
            vis_context.appendScope(QgsExpressionContextUtils.layerScope(layer))
            p = layer.project()
            if not isinstance(p, QgsProject):
                p = self.project()
            if isinstance(p, QgsProject):
                vis_context.appendScope(QgsExpressionContextUtils.projectScope(p))

            scope = QgsExpressionContextScope('profile_visualization')
            scope.setVariable('field_name', vis['field_name'])
            scope.setVariable('field_index', field_index)
            scope.setVariable('visualization_name', vis['name'])

            vis_plot_style: PlotStyle = PlotStyle.fromMap(vis['plot_style'])

            # candidate_plot_styles = self.mPROFILE_CANDIDATE_STYLES.get((layer_id, field_name), {})

            feature_renderer: QgsFeatureRenderer = layer.renderer()
            if isinstance(feature_renderer, QgsFeatureRenderer):
                feature_renderer = feature_renderer.clone()
                add_symbol_scope = 'symbol_color' in color_expression.expression()
            else:
                # layers without geometry do not have a symbol renderer
                add_symbol_scope = False
                feature_renderer = self.mDefaultSymbolRenderer.clone()

            show_candidates = vis.get('show_candidates', False)
            candidate_style = vis.get('candidate_style')
            if isinstance(candidate_style, dict):
                candidate_style = PlotStyle.fromMap(candidate_style)
            else:
                candidate_style = self.mDefaultProfileCandidateStyle.clone()

            for iFeature, feature in enumerate(layer_cache.getFeatures(request)):
                feature: QgsFeature
                fid = feature.id()
                if len(PLOT_ITEMS) >= max_profiles:
                    profile_limit_reached = True
                    break

                is_candidate = fid in candidate_fids

                # self.mVectorLayerCache.getFeatures(feature_priority):
                # feature: QgsFeature = self.mVectorLayerCache.getFeature(fid)
                # assert fid == feature.id()
                # fid = feature.id()

                t0 = datetime.datetime.now()
                plot_data: Optional[dict] = self.plotData1(layer_id, field_index, feature, xunit)
                add_dt('plotData1', t0)

                # t0 = datetime.datetime.now()
                # plot_data: Optional[dict] = self.plotData2(layer_id, field_index, feature, xunit)
                # add_dt('plotData2', t0)

                if not isinstance(plot_data, dict):
                    # profile data cannot be transformed to the requested x-unit
                    continue

                feature_context = QgsExpressionContext(vis_context)
                feature_context.setFeature(feature)

                # get the curve plot style
                if is_candidate:
                    if show_candidates:
                        plot_style = candidate_style
                    else:
                        continue
                else:
                    # get standard visualization style
                    plot_style = vis_plot_style.clone()
                    if add_symbol_scope:
                        renderContext = QgsRenderContext()
                        renderContext.setExpressionContext(feature_context)
                        feature_renderer.startRender(renderContext, feature.fields())
                        qgssymbol = feature_renderer.symbolForFeature(feature, renderContext)
                        symbolScope = None
                        if isinstance(qgssymbol, QgsSymbol):
                            symbolScope = qgssymbol.symbolRenderContext().expressionContextScope()
                            feature_context.appendScope(QgsExpressionContextScope(symbolScope))
                        feature_renderer.stopRender(renderContext)

                    line_color = color_expression.evaluate(feature_context)
                    if isinstance(line_color, str):
                        try:
                            line_color = QColor(line_color)
                        except Exception:
                            pass

                    if isinstance(line_color, QColor):
                        plot_style.setLineColor(line_color)
                        plot_style.setMarkerColor(line_color)
                        plot_style.setMarkerLinecolor(line_color)

                add_dt('plotStyle', t0)

                t0 = datetime.datetime.now()
                plot_label = label_expression.evaluate(feature_context)

                is_selected = not show_selected_only and fid in selected_fids

                pdi = SpectralProfilePlotDataItem(antialias=antialiasing)
                pdi.setClickable(True, 4)
                pdi.mLayerID = layer_id
                pdi.mVisID = vis_id
                pdi.mFeatureID = fid
                pdi.mField = field_name
                pdi.mFieldIndex = field_index
                pdi.mSelectedStyle = func_selected_style
                if is_candidate:
                    pdi.setZValue(99999)
                pdi.setProfileData(plot_data, plot_style,
                                   showBadBands=show_bad_bands,
                                   sortBands=sort_bands,
                                   label=plot_label)
                pdi.setCurveIsSelected(is_selected)
                PLOT_ITEMS.append(pdi)

        # check if x unit was different to this one
        if not self.mXUnitInitialized and len(PLOT_ITEMS) > 0:
            pdi: SpectralProfilePlotDataItem = PLOT_ITEMS[0]
            rawData = self.rawData(pdi.mLayerID, pdi.mFieldIndex, pdi.mFeatureID)

            if rawData:
                xunit2 = self.mXUnitModel.findUnit(rawData.get('xUnit', None))
                if isinstance(xunit2, str) and xunit2 != xunit:
                    self.mXUnitInitialized = True
                    self.setXUnit(xunit2)
                    # this will call updatePlot again, so we can return afterward
                    return

        t0 = datetime.datetime.now()
        # self.mPlotWidget.viewBox()._updatingRange = True
        self.mPlotWidget.plotItem.clearPlots()
        self.plotWidget().legend().clear()

        add_dt('clear plot', t0)
        t0 = datetime.datetime.now()

        def func_scatter_tooltip(pi: SpectralProfilePlotDataItem):
            """
            Yea! Currying
            Returns a tip function to generate the scatter plot point tooltip
            :param pi: plotdataitem
            :return: function def(x,y,data)->str
            """

            def scatter_tooltip(x, y, data) -> str:
                if self.showToolTips():
                    lyr = self.project().mapLayer(pi.mLayerID)
                    info = f'<i>{pi.name()}</i><br>x: {x}, y: {y}'
                    info += f'<br>fid: {pi.mFeatureID} field: {pi.mField}'
                    if isinstance(lyr, QgsVectorLayer):
                        info += f'<br>layer: {lyr.name()}'
                        info += f'<br>source: {lyr.source()}'
                else:
                    info = ""
                return info

            return scatter_tooltip

        with PlotUpdateBlocker(self.mPlotWidget) as blocker:
            hoverPen = mkPen(self.mCurrentSelectionColor)
            hoverBrush = mkBrush(self.mCurrentSelectionColor)
            for p in PLOT_ITEMS:
                p: SpectralProfilePlotDataItem
                p.sigClicked.connect(self.onCurveClicked)
                p.sigPointsClicked.connect(self.onPointsClicked)
                p.sigPointsHovered.connect(self.onPointsHovered)
                p.curve.setAcceptHoverEvents(True)
                p.setCurveClickable(True, 3)
                p.scatter.setAcceptHoverEvents(True)

                p.scatter.setData(  # hoverSymbol=p.scatter.opts['symbol'],
                    hoverPen=hoverPen,
                    hoverBrush=hoverBrush,
                    hoverable=True,
                    tip=func_scatter_tooltip(p),
                    hoverSize=p.scatter.opts.get('size', 5) + 2)

                self.mPlotWidget.plotItem.addItem(p)
        add_dt('add plot items', t0)

        infos = ['update durations:']
        for k, dtl in DT.items():
            dtl = np.asarray(dtl)
            infos.append(f'\t{k}: {dtl.sum():.2f} s  {dtl.mean():.3f}s n = {len(dtl)}')
        logger.debug('\n'.join(infos))

        self.updateStatistics(settings=settings)
        self.updateProfileLabel(len(PLOT_ITEMS), profile_limit_reached)

    def updateProfileLabel(self, n: int, limit_reached: bool):
        propertyItem = self.generalSettings().mP_MaxProfiles

        # with SignalBlocker(propertyItem.signals()) as blocker:
        # with SpectralProfilePlotModel.UpdateBlocker(self) as blocker:
        if limit_reached:
            fg = QColor('red')
            tt = 'Profile limit reached. Increase to show more profiles at the same time (decreases speed)'
        else:
            fg = None
            tt = propertyItem.definition().description()
        propertyItem.setData(tt, Qt.ToolTipRole)
        propertyItem.setData(fg, Qt.ForegroundRole)
        propertyItem.emitDataChanged()

        if limit_reached:
            self.sigMaxProfilesExceeded.emit()

    def supportedDragActions(self) -> Qt.DropActions:
        return Qt.CopyAction | Qt.MoveAction

    def supportedDropActions(self) -> Qt.DropActions:
        return Qt.CopyAction | Qt.MoveAction

    def profileDataToXUnit(self, profileData: dict, xUnit: str) -> Optional[dict]:
        """
        Converts the x values from plotData.get('xUnit') to xUnit.
        Returns None if a conversion is not possible (e.g., from meters to time)
        :param profileData: profile dictionary
        :param xUnit: str
        :return: dict | None
        """
        if not isinstance(profileData, dict):
            return None
        profileData = profileData.copy()
        if profileData.get('xUnit', None) == xUnit:
            return profileData

        func = self.mUnitConverterFunctionModel.convertFunction(profileData.get('xUnit', None), xUnit)
        x = func(profileData['x'])
        y = profileData['y']
        if x is None or len(x) == 0 or len(x) != len(y):
            return None
        else:
            # convert date units to float values with decimal year and second precision to make them plotable
            if isinstance(x[0], (datetime.datetime, datetime.date, datetime.time, np.datetime64)):
                x = convertDateUnit(datetime64(x), 'DecimalYear')

            if isinstance(y[0], (datetime.datetime, datetime.date, datetime.time, np.datetime64)):
                y = convertDateUnit(datetime64(y), 'DecimalYear')

            x = np.asarray(x)
            y = np.asarray(y)
            if not (np.issubdtype(x.dtype, np.number) and np.issubdtype(y.dtype, np.number)):
                return None

            profileData['x'] = x
            profileData['y'] = y
            profileData['xUnit'] = xUnit
            return profileData

    def generalSettings(self) -> GeneralSettingsGroup:
        return self.mGeneralSettings

    def clearCurveSelection(self):
        """
        Unselects all selected curves.
        :return:
        """
        for item in self.mPlotWidget.spectralProfilePlotDataItems():
            item.setCurveIsSelected(False)

    def defaultProfileStyle(self) -> PlotStyle:
        return self.mDefaultProfileStyle

    def setDefaultProfileStyle(self, style: PlotStyle):
        assert isinstance(style, PlotStyle)
        self.mDefaultProfileStyle = style

    def setDefaultProfileCandidateStyle(self, style: PlotStyle):
        assert isinstance(style, PlotStyle)
        self.mDefaultProfileCandidateStyle = style

    def defaultProfileCandidateStyle(self) -> PlotStyle:
        return self.mDefaultProfileCandidateStyle

    def hasProfileCandidates(self) -> bool:
        for layer in self.spectralLibraries():
            candidates = layer.customProperty(CUSTOM_PROPERTY_CANDIDATE_FIDs, [])
            if len(candidates) > 0:
                return True
        return False

    def setAddProfileCandidatesAutomatically(self, b: bool):
        self.mAddProfileCandidatesAutomatically = b

    # def addProfileCandidates(self, candidates: Dict[str, List[QgsFeature]]):
    #     """
    #     Adds QgsFeatures to be considered as profile candidates.
    #     :param candidates: Dictionary with profile candidates as {layer id:[List of QgsFeatures]}.
    #     """
    #     assert isinstance(candidates, dict)
    #     changed_layers = set()
    #     with SpectralProfilePlotModel.UpdateBlocker(self) as blocker:
    #         if self.mAddProfileCandidatesAutomatically:
    #             self.confirmProfileCandidates(update_plot=False)
    #         else:
    #             # remove previous candidates
    #             self.clearProfileCandidates()
    #
    #         visualized_layer_ids = [v.layerId() for v in self.visualizations()]
    #         missing_layer_ids = [k for k in candidates.keys() if k not in visualized_layer_ids]
    #         for lid in missing_layer_ids:
    #             lyr = self.project().mapLayer(lid)
    #
    #             if not isinstance(lyr, QgsVectorLayer) and lyr.isValid():
    #                 logger.warning(f'Can not get layer for layer id:{lid}')
    #                 continue
    #
    #             lyr_vis = None
    #             for vis in self.visualizations():
    #                 if vis.layerId() is None:
    #                     lyr_vis = vis
    #                     break
    #             if lyr_vis is None:
    #                 # create new visualization
    #                 lyr_vis = ProfileVisualizationGroup()
    #                 self.insertPropertyGroup(-1, lyr_vis)
    #
    #             lyr_vis.setProject(self.project())
    #             lyr_vis.setLayerField(lyr, None)
    #
    #         # add profile candidates
    #         visualized_layer_ids = [v.layerId() for v in self.visualizations()]
    #         for layer_id, features in candidates.items():
    #             if layer_id in visualized_layer_ids:
    #                 layer = self.project().mapLayer(layer_id)
    #                 if isinstance(layer, QgsVectorLayer) and layer.isValid():
    #                     # insert
    #                     s = ""
    #                     stop_editing = layer.startEditing()
    #                     if not isinstance(features, list):
    #                         features = list(features)
    #
    #                     new_fids = SpectralLibraryUtils.addProfiles(layer, features, addMissingFields=True)
    #
    #                     def check_commited_features_added(layer_id, idmap_2):
    #                         new_fids.clear()
    #                         new_fids.extend([f.id() for f in idmap_2])
    #
    #                     layer.committedFeaturesAdded.connect(check_commited_features_added)
    #                     layer.commitChanges(stopEditing=stop_editing)
    #                     layer.committedFeaturesAdded.disconnect(check_commited_features_added)
    #                     if not self.mAddProfileCandidatesAutomatically:
    #                         layer.setCustomProperty(CUSTOM_PROPERTY_CANDIDATE_FIDs, new_fids)
    #                         # self.mPROFILE_CANDIDATES[layer_id] = new_fids
    #                 changed_layers.add(layer_id)
    #
    #     self.SHARED_SIGNALS.candidatesChanged.emit(changed_layers)

    def addProfileCandidates(self, candidates: Dict[str, List[QgsFeature]]):

        sids = [s.id() for s in self.spectralLibraries()]
        candidates = {k: v for k, v in candidates.items() if k in sids}
        SpectralProfileCandidates.addProfileCandidates(self.project(), candidates)

    def confirmProfileCandidates(self):
        SpectralProfileCandidates.confirmProfileCandidates(self.spectralLibraries())

    def clearProfileCandidates(self):
        SpectralProfileCandidates.removeProfileCandidates(self.spectralLibraries())

    def flushProxySignals(self):
        """
        Flushes all SignalProxys
        """
        for _, signals in self.mSignalProxies.items():
            for s in signals:
                s.flush()

    def updateSpeclibConnections(self):

        required = []
        for vis in self.visualizations():
            lid = vis.layerId()
            required.append(lid)
            if lid not in self.mSignalProxies.keys():
                layer = vis.layer()
                if isinstance(layer, QgsVectorLayer):
                    self.connectSpeclibSignals(layer)

        to_remove = [k for k in self.mSignalProxies.keys() if k not in required]
        for k in to_remove:
            self.disconnectSpeclibSignals(k)

    def connectSpeclibSignals(self, speclib: QgsVectorLayer):
        """"
        Connects signals to the given spectral library vector layer.
        """
        rl = self._update_rate_limit

        def _plotted_value_changed(lid, *args, **kwargs):
            t = args[0][0]
            if len(t) == 3:
                fid, aidx, value = t
                if aidx in self.mLastReferencedColumns.get(lid, set()):
                    self.updatePlot()

        def _attribute_added(lid, aid):
            s = ""
            lyr = self.project().mapLayer(lid)
            if isinstance(lyr, QgsVectorLayer):
                if isinstance(aid, tuple):
                    aid = aid[0]
                field = lyr.fields().field(aid)
                if is_profile_field(field):
                    s = ""

        def _attribute_removed(lid, *args, **kwargs):
            s = ""

        def _dev_on_features_added(*args, **kwargs):
            s = ""

        if speclib.id() not in self.mSignalProxies:
            speclib.committedFeaturesAdded.connect(_dev_on_features_added)
            # speclib.attributeAdded.connect(_attribute_added)
            proxies = [
                SignalProxyUndecorated(speclib.selectionChanged, rateLimit=rl, slot=self.onSpeclibSelectionChanged),
                SignalProxy(speclib.attributeValueChanged, delay=1, rateLimit=rl * 10,
                            slot=lambda *args, lid=speclib.id(): _plotted_value_changed(lid, args)),
                SignalProxyUndecorated(speclib.featuresDeleted, rateLimit=rl,
                                       slot=lambda: self.updatePlot()),

                SignalProxyUndecorated(speclib.featureAdded, rateLimit=rl,
                                       slot=lambda *args, lid=speclib.id(): self.updatePlot()),

                SignalProxy(speclib.styleChanged, rateLimit=rl, slot=self.onSpeclibStyleChanged),

                SignalProxyUndecorated(speclib.attributeAdded, rateLimit=rl,
                                       slot=lambda aid, lid=speclib.id(): _attribute_added(lid, aid)),

                SignalProxy(speclib.updatedFields, rateLimit=rl, slot=lambda: self.onSpeclibFieldsUpdated),
            ]

            self.mSignalProxies[speclib.id()] = proxies
            speclib.willBeDeleted.connect(lambda *args, fid=speclib.id(): self.disconnectSpeclibSignals(fid))

        # speclib.attributeValueChanged.connect(self.onSpeclibAttributeValueChanged)
        # speclib.editCommandStarted.connect(self.onSpeclibEditCommandStarted)
        # speclib.editCommandEnded.connect(self.onSpeclibEditCommandEnded)
        # speclib.committedAttributeValuesChanges.connect(self.onSpeclibCommittedAttributeValuesChanges)
        # speclib.beforeCommitChanges.connect(self.onSpeclibBeforeCommitChanges)
        # speclib.afterCommitChanges.connect(self.onSpeclibAfterCommitChanges)
        # speclib.committedFeaturesAdded.connect(self.onSpeclibCommittedFeaturesAdded)
        # speclib.featuresDeleted.connect(self.onSpeclibFeaturesDeleted)
        # speclib.selectionChanged.connect(self.onSpeclibSelectionChanged)
        # speclib.styleChanged.connect(self.onSpeclibStyleChanged)

        # speclib.willBeDeleted.connect(lambda *args, sl=speclib: self.disconnectSpeclibSignals(sl))

    def disconnectSpeclibSignals(self, speclib: Union[str, QgsVectorLayer]):

        if isinstance(speclib, QgsVectorLayer):
            lid = speclib.id()
        else:
            lid = speclib

        if lid in self.mSignalProxies:
            for proxy in self.mSignalProxies[lid]:
                proxy.disconnect()
            del self.mSignalProxies[lid]

    def onItemChanged(self, item: QStandardItem, *args):
        """
        Link changes between items, e.g. to react on changes in general settings
        :param item:
        :param args:
        :return:
        """
        if isinstance(item, tuple):
            item = item[0]
        if isinstance(item, PropertyItem):
            grp = item.parent()
        else:
            grp = None

        if isinstance(item, SpectralProfileLayerFieldItem):
            self.updateSpeclibConnections()
            if isinstance(grp, ProfileVisualizationGroup):
                grp.mPColor.emitDataChanged()
                self.sigLayersChanged.emit()

        if isinstance(item, RasterRendererGroup):
            s = ""
        elif isinstance(item, ProfileColorPropertyItem):
            if isinstance(grp, ProfileVisualizationGroup):
                style = grp.mPStyle.plotStyle()
                expr = grp.colorExpression()

                context = grp.expressionContextGenerator().createExpressionContext()

                expression = QgsExpression(expr)
                value = expression.evaluate(context)
                if value:
                    color = QColor(value)
                    style.setLineColor(color)
                    style.setMarkerColor(color)

                    grp.setPlotStyle(style)

                    style.setLineColor()
                    grp.setPlotStyle(style)

    def onSpeclibFieldsUpdated(self, *args, **kwargs):

        profilefields = profile_fields(self.speclib())
        to_remove = []
        to_add = []

        # remove visualizations for removed fields
        for vis in self.profileVisualizations():
            if not isinstance(vis.field(), QgsField) or vis.field().name() not in profilefields.names():
                to_remove.append(vis)

        self.mPlotControlModel.removePropertyItemGroups(to_remove)

        for name in list(self.mINITIALIZED_VISUALIZATIONS):
            if name not in profilefields.names():
                self.mINITIALIZED_VISUALIZATIONS.remove(name)

        for field in profilefields:
            name = field.name()
            if name not in self.mINITIALIZED_VISUALIZATIONS:
                has_checked_vis = any([v.checkState() == Qt.Checked for v in self.profileVisualizations()])

                self.createProfileVisualization(field=field, checked=not has_checked_vis)
                # keep in mind if a visualization was created at least once for a profile field
                self.mINITIALIZED_VISUALIZATIONS.add(name)

    def onSpeclibStyleChanged(self, *args):

        b = False
        # we need to update the plot if any visualization uses the vector layer's symbol style
        for vis in self.visualizations():
            if vis.isVisible() and 'symbol_color' in vis.colorExpression():
                b = True
                break
        if b:
            self.updatePlot()

    def onSpeclibSelectionChanged(self, *args, **kwds):

        if self.showSelectedFeaturesOnly():
            self.updatePlot()
        else:
            self._updateCurveSelectionFromFeatures()
        # self.updatePlot()

    def onDualViewSliderMoved(self, *args):
        pass
        # self.updatePlot()

    def onDualViewSelectionChanged(self, *args):
        s = ""
        pass

    def onPlotSelectionRequest(self, pdi, modifiers):
        pdi: SpectralProfilePlotDataItem
        assert isinstance(pdi, SpectralProfilePlotDataItem)
        if isinstance(self.speclib(), QgsVectorLayer):
            vis, fid, field, xUnit = pdi.visualizationKey()

            vis: ProfileVisualizationGroup
            speclib = vis.speclib()

            if isinstance(speclib, QgsVectorLayer):
                fids = self.speclib().selectedFeatureIds()
                if modifiers == Qt.NoModifier:
                    fids = [fid]
                elif modifiers == Qt.ShiftModifier or modifiers == Qt.ControlModifier:
                    if fid in fids:
                        fids.remove(fid)
                    else:
                        fids.append(fid)
                speclib.selectByIds(fids)

    # def speclib(self) -> QgsVectorLayer:
    #    return self.mSpeclib

    def profileFields(self) -> List[QgsField]:
        return profile_field_list(self.speclib())

    def profileFieldIndices(self) -> List[int]:
        return profile_field_indices(self.speclib())

    def profileFieldNames(self) -> List[str]:
        return profile_field_indices()

    PropertyIndexRole = Qt.UserRole + 1
    PropertyDefinitionRole = Qt.UserRole + 2
    PropertyRole = Qt.UserRole + 3


def copy_items(items: List[SpectralProfilePlotDataItem],
               mode: str = 'json',
               xUnit: Optional[str] = None):
    mode = mode.lower()
    assert mode in ['json', 'csv', 'excel']

    txt = None
    if mode == 'json':
        s = ""
        data = []
        for item in items:
            item: SpectralProfilePlotDataItem

            d = {'x': item.xData.tolist(),
                 'y': item.yData.tolist(),

                 }
            data.append(d)
            s = ""
        if xUnit is not None:
            for item in data:
                item['xUnit'] = xUnit
        txt = json.dumps(data, ensure_ascii=False)
    elif mode in ['csv', 'excel']:
        # make one big CSV table
        # sort by x vector
        pairs = []

        names = []
        for i, item in enumerate(items):
            item: SpectralProfilePlotDataItem
            pairs.append((item.xData, item.yData))
            name = item.name()
            if name in [None, '']:
                name = f'profile_{i + 1}'
            names.append(name)

        x_values, Y_Values = xy_pair_matrix(pairs)

        ncol = len(items) + 2
        nrow = len(x_values) + 1
        arr = np.empty((nrow, ncol), dtype=object)
        # header
        arr[0, 0] = 'x'
        arr[0, 1] = 'x unit'
        arr[0, 2:] = np.asarray(names)
        arr[1:, 0] = x_values
        arr[1:, 1] = xUnit
        arr[1:, 2:] = Y_Values

        arr = np.where(np.equal(arr, None), '', arr)
        arr = np.where(arr == np.nan, '', arr)
        output = io.StringIO()

        delimiter = {'excel': '\t',
                     'csv': ','}[mode]
        np.savetxt(output, arr, fmt='%s', delimiter=delimiter)

        # Get the CSV-formatted string
        txt = output.getvalue()

    if txt:
        md = QMimeData()
        md.setText(txt)
        QApplication.clipboard().setMimeData(md)
